org.fhcrc.cpl.viewer.test.commandline
Class FilterFeaturesTest

java.lang.Object
  junit.framework.Assert
      junit.framework.TestCase
          org.fhcrc.cpl.toolbox.test.BaseCommandTest
              org.fhcrc.cpl.toolbox.test.commandline.BaseCommandLineTest
                  org.fhcrc.cpl.viewer.test.commandline.FilterFeaturesTest

All Implemented Interfaces:

junit.framework.Test

public class FilterFeaturesTest
extends BaseCommandLineTest
implements junit.framework.Test

Field Summary

protected static java.lang.String	sumMinCharge1MaxCharge1MaxKl2
protected static java.lang.String	sumMinIntensity15
protected static java.lang.String	sumMinPeaks3
protected static java.lang.String	sumMinTime1500MaxTime1550
protected static java.lang.String	sumMinTotalIntensity1000
protected static java.lang.String	sumScanFirst100ScanLast200

Fields inherited from class org.fhcrc.cpl.toolbox.test.commandline.BaseCommandLineTest

commandLineModule

Constructor Summary

FilterFeaturesTest()

Method Summary

protected CommandLineModule	createCommandLineModule() Return an instance of the FilterFeaturesCommandLineModule
protected void	doCleanup() Each implementing class can do special cleanup here
protected void	doRun(junit.framework.TestResult result) Strategy is to filter a set of features in various ways and then compare MD5 sums of the resulting feature files (with whitespace removed) with sums computed when the tests were written

Methods inherited from class org.fhcrc.cpl.toolbox.test.commandline.BaseCommandLineTest

clearArgumentValues, executeCommandLineModule, getCommandLineModule, renewCommandLineModule, setArgumentValue, setUnnamedArgumentValue, setUnnamedSeriesArgumentValue, unsetArgumentValue, unsetUnnamedArgumentValue

Methods inherited from class org.fhcrc.cpl.toolbox.test.BaseCommandTest

cleanup, constructTempFilePath, getTempDirName, log, run

Methods inherited from class junit.framework.TestCase

countTestCases, createResult, getName, run, runBare, runTest, setName, setUp, tearDown, toString

Methods inherited from class junit.framework.Assert

assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertFalse, assertFalse, assertNotNull, assertNotNull, assertNotSame, assertNotSame, assertNull, assertNull, assertSame, assertSame, assertTrue, assertTrue, fail, fail, failNotEquals, failNotSame, failSame, format

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface junit.framework.Test

countTestCases, run

Field Detail

sumMinCharge1MaxCharge1MaxKl2

protected static final java.lang.String sumMinCharge1MaxCharge1MaxKl2

See Also:

Constant Field Values

sumScanFirst100ScanLast200

protected static final java.lang.String sumScanFirst100ScanLast200

See Also:

Constant Field Values

sumMinTime1500MaxTime1550

protected static final java.lang.String sumMinTime1500MaxTime1550

See Also:

Constant Field Values

sumMinIntensity15

protected static final java.lang.String sumMinIntensity15

See Also:

Constant Field Values

sumMinTotalIntensity1000

protected static final java.lang.String sumMinTotalIntensity1000

See Also:

Constant Field Values

sumMinPeaks3

protected static final java.lang.String sumMinPeaks3

See Also:

Constant Field Values

Constructor Detail

FilterFeaturesTest

public FilterFeaturesTest()

Method Detail

createCommandLineModule

protected CommandLineModule createCommandLineModule()

Return an instance of the FilterFeaturesCommandLineModule

Specified by:

createCommandLineModule in class BaseCommandLineTest

Returns:

doCleanup

protected void doCleanup()

Description copied from class: BaseCommandTest

Each implementing class can do special cleanup here

Specified by:

doCleanup in class BaseCommandTest

doRun

protected void doRun(junit.framework.TestResult result)

Strategy is to filter a set of features in various ways and then compare MD5 sums of the resulting feature files (with whitespace removed) with sums computed when the tests were written

Specified by:

doRun in class BaseCommandTest

Parameters:

result -