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| Class Summary | |
|---|---|
| PeakOverlapCorrection | Methods for correcting isotopically labeled light and heavy areas to account for peak overlap. |
| Q3 | Apply Marc Coram's q3 quantitation method to a pepXML file. |
| Q3.IsotopicLabel | |
| QuantEvent | Holds all the information related to a quantitative event for display. |
| QuantEvent.PeptideSequenceAscComparator | |
| QuantEvent.PeptideSequenceAscFractionAscChargeModificationsAscRatioAscComparator | sort by peptide, then fraction, then charge, then modifications. |
| QuantEvent.ProteinPeptideFractionChargeModificationsRatioAscComparator | sort by peptide, then fraction, then charge, then modifications. |
| QuantEvent.QuantEventPropertiesTable | |
| QuantEvent.RatioAscComparator | |
| QuantEvent.ScanAscComparator | |
| QuantEventAssessor | This uses a big HACK, adding a dummy search score to peptide features to store the flag reason description |
| QuantEventAssessor.QuantEventAssessment | Class for communicating assessment results |
| QuantEventAssessor.QuantPeakSetSummary | Data structure to pass around summary information about one set of peaks (light or heavy) |
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