org.fhcrc.cpl.viewer.ms2
Class GeneMappingUtilities.InfoForGene

java.lang.Object
  org.fhcrc.cpl.viewer.ms2.GeneMappingUtilities.InfoForGene

Enclosing class:

GeneMappingUtilities

public static class GeneMappingUtilities.InfoForGene
extends java.lang.Object

Field Summary

protected java.util.List<java.lang.Double>	intensities1
protected java.util.List<java.lang.Double>	intensities2
protected java.util.List<java.lang.String>	peptides
protected java.util.Set<java.lang.String>	proteins
protected java.util.List<java.lang.Double>	ratios
protected java.lang.String	symbol

Constructor Summary

GeneMappingUtilities.InfoForGene(java.lang.String symbol)

GeneMappingUtilities.InfoForGene(java.lang.String symbol, java.util.List<java.lang.String> peptides, java.util.List<java.lang.Double> ratios, java.util.List<java.lang.Double> intensities1, java.util.List<java.lang.Double> intensities2, java.util.Set<java.lang.String> proteins)

Method Summary

java.util.List<java.lang.Double>	getIntensities1()
java.util.List<java.lang.Double>	getIntensities2()
java.util.List<java.lang.String>	getPeptides()
java.util.Set<java.lang.String>	getProteins()
java.util.List<java.lang.Double>	getRatios()
java.lang.String	getSymbol()
void	setIntensities1(java.util.List<java.lang.Double> intensities1)
void	setIntensities2(java.util.List<java.lang.Double> intensities2)
void	setPeptides(java.util.List<java.lang.String> peptides)
void	setProteins(java.util.Set<java.lang.String> proteins)
void	setRatios(java.util.List<java.lang.Double> ratios)
void	setSymbol(java.lang.String symbol)
java.lang.String	toString()
static void	writeGeneRatioFile(java.util.Collection<GeneMappingUtilities.InfoForGene> infosForGenes, java.io.File outFile)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

ratios

protected java.util.List<java.lang.Double> ratios

intensities1

protected java.util.List<java.lang.Double> intensities1

intensities2

protected java.util.List<java.lang.Double> intensities2

proteins

protected java.util.Set<java.lang.String> proteins

peptides

protected java.util.List<java.lang.String> peptides

symbol

protected java.lang.String symbol

Constructor Detail

GeneMappingUtilities.InfoForGene

public GeneMappingUtilities.InfoForGene(java.lang.String symbol,
                                        java.util.List<java.lang.String> peptides,
                                        java.util.List<java.lang.Double> ratios,
                                        java.util.List<java.lang.Double> intensities1,
                                        java.util.List<java.lang.Double> intensities2,
                                        java.util.Set<java.lang.String> proteins)

GeneMappingUtilities.InfoForGene

public GeneMappingUtilities.InfoForGene(java.lang.String symbol)

Method Detail

getRatios

public java.util.List<java.lang.Double> getRatios()

setRatios

public void setRatios(java.util.List<java.lang.Double> ratios)

getIntensities1

public java.util.List<java.lang.Double> getIntensities1()

setIntensities1

public void setIntensities1(java.util.List<java.lang.Double> intensities1)

getIntensities2

public java.util.List<java.lang.Double> getIntensities2()

setIntensities2

public void setIntensities2(java.util.List<java.lang.Double> intensities2)

getProteins

public java.util.Set<java.lang.String> getProteins()

setProteins

public void setProteins(java.util.Set<java.lang.String> proteins)

getSymbol

public java.lang.String getSymbol()

setSymbol

public void setSymbol(java.lang.String symbol)

getPeptides

public java.util.List<java.lang.String> getPeptides()

setPeptides

public void setPeptides(java.util.List<java.lang.String> peptides)

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

writeGeneRatioFile

public static void writeGeneRatioFile(java.util.Collection<GeneMappingUtilities.InfoForGene> infosForGenes,
                                      java.io.File outFile)
                               throws CommandLineModuleExecutionException

Throws:

CommandLineModuleExecutionException