org.fhcrc.cpl.viewer.mrm
Class ElutionCurve

java.lang.Object
  org.fhcrc.cpl.viewer.mrm.ElutionCurve

public class ElutionCurve
extends java.lang.Object

Created by IntelliJ IDEA. User: tholzman Date: Mar 19, 2007 Time: 11:47:13 AM To change this template use File | Settings | File Templates.

Field Summary

protected org.jfree.data.xy.XYSeries	graphRegion
protected double	highestPointX

Constructor Summary

ElutionCurve()

ElutionCurve(ElutionCurveStrategy s)

ElutionCurve(PlotDataSupplier p)

ElutionCurve(PlotDataSupplier pds, ElutionCurveStrategy s)

Method Summary

void	calculateCMPoints()
void	calculateHighPoints()
double	getAUC()
double	getBackgroundLevel()
float[][]	getBackgroundLevels()
double	getCenterOfMassX()
org.jfree.data.xy.XYSeries	getGraphRegion()
double	getHighestPointX()
double	getHighestPointY()
int	getMaxArrayIndex()
double	getMaxElutionTimeSecs()
int	getMaxOrigArrayIndex()
long	getMaxScan()
int	getMinArrayIndex()
double	getMinElutionTimeSecs()
int	getMinOrigArrayIndex()
long	getMinScan()
PlotDataSupplier	getParent()
java.util.ArrayList<java.awt.geom.Line2D.Double>	getSegments()
ElutionCurveStrategy	getStrategy()
void	setAUC(double AUC)
void	setBackgroundLevel(double backgroundLevel)
void	setBackgroundLevels(float[][] backgroundLevels)
void	setCenterOfMassX(double centerOfMassX)
void	setGraphRegion(org.jfree.data.xy.XYSeries graphRegion)
void	setHighestPointX(double highestPointX)
void	setHighestPointY(double highestPointY)
void	setMaxArrayIndex(int maxArrayIndex)
void	setMaxElutionTimeSecs(double maxElutionTimeSecs)
void	setMaxOrigArrayIndex(int maxOrigArrayIndex)
void	setMaxScan(long maxScan)
void	setMinArrayIndex(int minArrayIndex)
void	setMinElutionTimeSecs(double minElutionTimeSecs)
void	setMinOrigArrayIndex(int minOrigArrayIndex)
void	setMinScan(long minScan)
void	setParent(PlotDataSupplier parent)
void	setSegments(java.util.ArrayList<java.awt.geom.Line2D.Double> segs)
void	setStrategy(ElutionCurveStrategy strategy)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

highestPointX

protected double highestPointX

graphRegion

protected org.jfree.data.xy.XYSeries graphRegion

Constructor Detail

ElutionCurve

public ElutionCurve()

ElutionCurve

public ElutionCurve(PlotDataSupplier p)

ElutionCurve

public ElutionCurve(ElutionCurveStrategy s)

ElutionCurve

public ElutionCurve(PlotDataSupplier pds,
                    ElutionCurveStrategy s)

Method Detail

getMinScan

public long getMinScan()

setMinScan

public void setMinScan(long minScan)

getMaxScan

public long getMaxScan()

setMaxScan

public void setMaxScan(long maxScan)

getMinArrayIndex

public int getMinArrayIndex()

setMinArrayIndex

public void setMinArrayIndex(int minArrayIndex)

getMaxArrayIndex

public int getMaxArrayIndex()

setMaxArrayIndex

public void setMaxArrayIndex(int maxArrayIndex)

getMinOrigArrayIndex

public int getMinOrigArrayIndex()

setMinOrigArrayIndex

public void setMinOrigArrayIndex(int minOrigArrayIndex)

getMaxOrigArrayIndex

public int getMaxOrigArrayIndex()

setMaxOrigArrayIndex

public void setMaxOrigArrayIndex(int maxOrigArrayIndex)

getMinElutionTimeSecs

public double getMinElutionTimeSecs()

setMinElutionTimeSecs

public void setMinElutionTimeSecs(double minElutionTimeSecs)

getMaxElutionTimeSecs

public double getMaxElutionTimeSecs()

setMaxElutionTimeSecs

public void setMaxElutionTimeSecs(double maxElutionTimeSecs)

getAUC

public double getAUC()

setAUC

public void setAUC(double AUC)

getHighestPointX

public double getHighestPointX()

setHighestPointX

public void setHighestPointX(double highestPointX)

getHighestPointY

public double getHighestPointY()

setHighestPointY

public void setHighestPointY(double highestPointY)

getCenterOfMassX

public double getCenterOfMassX()

setCenterOfMassX

public void setCenterOfMassX(double centerOfMassX)

getBackgroundLevel

public double getBackgroundLevel()

setBackgroundLevel

public void setBackgroundLevel(double backgroundLevel)

getBackgroundLevels

public float[][] getBackgroundLevels()

setBackgroundLevels

public void setBackgroundLevels(float[][] backgroundLevels)

getParent

public PlotDataSupplier getParent()

setParent

public void setParent(PlotDataSupplier parent)

getSegments

public java.util.ArrayList<java.awt.geom.Line2D.Double> getSegments()

setSegments

public void setSegments(java.util.ArrayList<java.awt.geom.Line2D.Double> segs)

getStrategy

public ElutionCurveStrategy getStrategy()

setStrategy

public void setStrategy(ElutionCurveStrategy strategy)

getGraphRegion

public org.jfree.data.xy.XYSeries getGraphRegion()

setGraphRegion

public void setGraphRegion(org.jfree.data.xy.XYSeries graphRegion)

calculateHighPoints

public void calculateHighPoints()

calculateCMPoints

public void calculateCMPoints()