org.fhcrc.cpl.viewer.gui
Class FeatureSelectionFrame.FeatureSelectionDialog

java.lang.Object
  java.awt.Component
      java.awt.Container
          java.awt.Window
              java.awt.Dialog
                  javax.swing.JDialog
                      org.fhcrc.cpl.viewer.gui.FeatureSelectionFrame.FeatureSelectionDialog

All Implemented Interfaces:

java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants

Enclosing class:

FeatureSelectionFrame

public static class FeatureSelectionFrame.FeatureSelectionDialog
extends javax.swing.JDialog

See Also:

Serialized Form

Nested Class Summary

static class	FeatureSelectionFrame.FeatureSelectionDialog.BrowseEditor
static class	FeatureSelectionFrame.FeatureSelectionDialog.ColorEditor
static class	FeatureSelectionFrame.FeatureSelectionDialog.ColorRenderer
static class	FeatureSelectionFrame.FeatureSelectionDialog.FeatureFrame
static class	FeatureSelectionFrame.FeatureSelectionDialog.NumberRenderer
static class	FeatureSelectionFrame.FeatureSelectionDialog.Optimizer

Nested classes/interfaces inherited from class javax.swing.JDialog

javax.swing.JDialog.AccessibleJDialog

Nested classes/interfaces inherited from class java.awt.Dialog

java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType

Nested classes/interfaces inherited from class java.awt.Window

java.awt.Window.AccessibleAWTWindow

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

int	action
static int	ACTION_CANCEL
static int	ACTION_OK
javax.swing.JButton	buttonAddFiles
javax.swing.JButton	buttonApply
javax.swing.JButton	buttonBrowseOutputDir
javax.swing.JButton	buttonCancel
javax.swing.JButton	buttonCreatePeptideArray
javax.swing.JButton	buttonOK
javax.swing.JButton	buttonOptimize
javax.swing.JButton	buttonRemoveFiles
javax.swing.JCheckBox	checkBoxNormalize
static javax.swing.JFileChooser	chooser
javax.swing.JLabel	lblExactMatches
javax.swing.JLabel	lblNumBuckets
static javax.swing.JFileChooser	saveChooser
javax.swing.JTabbedPane	tabbedPane
javax.swing.JTable	tblFeatureSets
javax.swing.JTextField	textMaxCharge
javax.swing.JTextField	textMaxKL
javax.swing.JTextField	textMaxMz
javax.swing.JTextField	textMinCharge
javax.swing.JTextField	textMinIntensity
javax.swing.JTextField	textMinMz
javax.swing.JTextField	textMinPeaks
javax.swing.JTextField	textMinScans
javax.swing.JTextField	textOutputFile
javax.swing.JTextField	textPepArrayMzBucket
javax.swing.JTextField	textPepArrayScanBucket

Fields inherited from class javax.swing.JDialog

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog

DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

FeatureSelectionFrame.FeatureSelectionDialog()

Method Summary

void	addFeatureSet(Feature[] features)
void	addFeatureSet(FeatureSet featureSet)
void	addFeatureSet(java.io.File file)
void	buttonAddFile_actionPerformed(java.awt.event.ActionEvent event)
void	buttonRemoveFiles_actionPerformed(java.awt.event.ActionEvent event)
protected java.util.List<FeatureSet>	generateMergedSets(java.util.List<? extends FeatureSet> featureSets, FeatureSet.FeatureSelector sel) Generates a new merged feature list
java.util.List	getFeatureRanges()
FeatureSet.FeatureSelector	getFeatureSelector()
java.util.List	getFeatureSets()
static FeatureSelectionFrame.FeatureSelectionDialog	getInstance()
static java.awt.Color	nextColor()
void	updateFeatureSelector(FeatureSet.FeatureSelector sel) Updates the featureselector based on the currently loaded features
void	updateFeatureSets(java.util.List<? extends FeatureSet> featureSets, boolean displayOnly)

Methods inherited from class javax.swing.JDialog

addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog

addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setModal, setModalityType, setResizable, setTitle, setUndecorated, setVisible, show, toBack

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getGraphicsConfiguration, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOwnedWindows, getOwner, getOwnerlessWindows, getToolkit, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isShowing, pack, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paint, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resize, resize, setBackground, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setMaximumSize, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

ACTION_CANCEL

public static final int ACTION_CANCEL

See Also:

Constant Field Values

ACTION_OK

public static final int ACTION_OK

See Also:

Constant Field Values

action

public int action

tblFeatureSets

public javax.swing.JTable tblFeatureSets

buttonAddFiles

public javax.swing.JButton buttonAddFiles

buttonRemoveFiles

public javax.swing.JButton buttonRemoveFiles

tabbedPane

public javax.swing.JTabbedPane tabbedPane

textMinMz

public javax.swing.JTextField textMinMz

textMaxMz

public javax.swing.JTextField textMaxMz

textMinCharge

public javax.swing.JTextField textMinCharge

textMaxCharge

public javax.swing.JTextField textMaxCharge

textMinScans

public javax.swing.JTextField textMinScans

textMaxKL

public javax.swing.JTextField textMaxKL

textMinIntensity

public javax.swing.JTextField textMinIntensity

textMinPeaks

public javax.swing.JTextField textMinPeaks

textOutputFile

public javax.swing.JTextField textOutputFile

buttonBrowseOutputDir

public javax.swing.JButton buttonBrowseOutputDir

textPepArrayMzBucket

public javax.swing.JTextField textPepArrayMzBucket

textPepArrayScanBucket

public javax.swing.JTextField textPepArrayScanBucket

checkBoxNormalize

public javax.swing.JCheckBox checkBoxNormalize

buttonOptimize

public javax.swing.JButton buttonOptimize

lblNumBuckets

public javax.swing.JLabel lblNumBuckets

lblExactMatches

public javax.swing.JLabel lblExactMatches

buttonCreatePeptideArray

public javax.swing.JButton buttonCreatePeptideArray

buttonCancel

public javax.swing.JButton buttonCancel

buttonApply

public javax.swing.JButton buttonApply

buttonOK

public javax.swing.JButton buttonOK

chooser

public static javax.swing.JFileChooser chooser

saveChooser

public static javax.swing.JFileChooser saveChooser

Constructor Detail

FeatureSelectionFrame.FeatureSelectionDialog

public FeatureSelectionFrame.FeatureSelectionDialog()

Method Detail

getInstance

public static FeatureSelectionFrame.FeatureSelectionDialog getInstance()

nextColor

public static java.awt.Color nextColor()

getFeatureSets

public java.util.List getFeatureSets()

getFeatureRanges

public java.util.List getFeatureRanges()

getFeatureSelector

public FeatureSet.FeatureSelector getFeatureSelector()

addFeatureSet

public void addFeatureSet(java.io.File file)

addFeatureSet

public void addFeatureSet(Feature[] features)

addFeatureSet

public void addFeatureSet(FeatureSet featureSet)

updateFeatureSelector

public void updateFeatureSelector(FeatureSet.FeatureSelector sel)

Updates the featureselector based on the currently loaded features

Parameters:

sel -

generateMergedSets

protected java.util.List<FeatureSet> generateMergedSets(java.util.List<? extends FeatureSet> featureSets,
                                                        FeatureSet.FeatureSelector sel)

Generates a new merged feature list

Parameters:

featureSets -

sel -

Returns:

updateFeatureSets

public void updateFeatureSets(java.util.List<? extends FeatureSet> featureSets,
                              boolean displayOnly)

buttonAddFile_actionPerformed

public void buttonAddFile_actionPerformed(java.awt.event.ActionEvent event)

buttonRemoveFiles_actionPerformed

public void buttonRemoveFiles_actionPerformed(java.awt.event.ActionEvent event)