org.fhcrc.cpl.viewer.gui
Class CoverageCalculatorAction

java.lang.Object
  javax.swing.AbstractAction
      org.fhcrc.cpl.viewer.gui.CoverageCalculatorAction

All Implemented Interfaces:

java.awt.event.ActionListener, java.beans.PropertyChangeListener, java.io.Serializable, java.lang.Cloneable, java.util.EventListener, javax.swing.Action

public class CoverageCalculatorAction
extends javax.swing.AbstractAction
implements java.beans.PropertyChangeListener

User: migra Date: Jul 13, 2004 Time: 1:08:05 PM

See Also:

Serialized Form

Field Summary

Fields inherited from class javax.swing.AbstractAction

changeSupport, enabled

Fields inherited from interface javax.swing.Action

ACCELERATOR_KEY, ACTION_COMMAND_KEY, DEFAULT, DISPLAYED_MNEMONIC_INDEX_KEY, LARGE_ICON_KEY, LONG_DESCRIPTION, MNEMONIC_KEY, NAME, SELECTED_KEY, SHORT_DESCRIPTION, SMALL_ICON

Constructor Summary

CoverageCalculatorAction()

Method Summary

void	actionPerformed(java.awt.event.ActionEvent event) Output a file with feature coverage information for each protein in the current fasta-file and the current set of features.
void	propertyChange(java.beans.PropertyChangeEvent event)

Methods inherited from class javax.swing.AbstractAction

addPropertyChangeListener, clone, firePropertyChange, getKeys, getPropertyChangeListeners, getValue, isEnabled, putValue, removePropertyChangeListener, setEnabled

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CoverageCalculatorAction

public CoverageCalculatorAction()

Method Detail

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent event)

Output a file with feature coverage information for each protein in the current fasta-file and the current set of features. Tab delimted output has following columns: Protein id, distance, length, coveredLength, peptides, coveredPeptides

Search is done according to current feature & fasta settings

Specified by:

actionPerformed in interface java.awt.event.ActionListener

propertyChange

public void propertyChange(java.beans.PropertyChangeEvent event)

Specified by:

propertyChange in interface java.beans.PropertyChangeListener