org.fhcrc.cpl.viewer.feature
Class FeatureStrategyPeaks2

java.lang.Object
  org.fhcrc.cpl.viewer.feature.FeatureExtractor
      org.fhcrc.cpl.viewer.feature.FeatureStrategyUsingWindow
          org.fhcrc.cpl.viewer.feature.FeatureStrategyPeakClustersOld
              org.fhcrc.cpl.viewer.feature.FeatureStrategyPeaks2

public class FeatureStrategyPeaks2
extends FeatureStrategyPeakClustersOld

User: mbellew Date: Nov 2, 2004

Nested Class Summary

Nested classes/interfaces inherited from class org.fhcrc.cpl.viewer.feature.FeatureExtractor

FeatureExtractor.StatusListener

Field Summary

Fields inherited from class org.fhcrc.cpl.viewer.feature.FeatureStrategyPeakClustersOld

debugReturnPeaks, smoothTHRESHOLD

Fields inherited from class org.fhcrc.cpl.viewer.feature.FeatureStrategyUsingWindow

_noise

Fields inherited from class org.fhcrc.cpl.viewer.feature.FeatureExtractor

_dumpWindowSize, _maxCharge, _mzRange, _run, _scanCount, _sn, _startScan, _status, DEFAULT_EXTRACTOR_PROPERTYNAME, TYPE_1D, TYPE_2D

Constructor Summary

FeatureStrategyPeaks2(MSRun run, int scanIndex, int count, int maxCharge, FloatRange range, double sn)

Method Summary

Methods inherited from class org.fhcrc.cpl.viewer.feature.FeatureStrategyPeakClustersOld

_analyze, _logDebug, _thresholdElution, AccurateMass, AccurateMassCentroid, AccurateMassProfile, analyze2D, calculateMedian, getType, resampleSpectra

Methods inherited from class org.fhcrc.cpl.viewer.feature.FeatureStrategyUsingWindow

_pickPeaks, _smooth, analyze1D, ExtractPeptideFeatures, ScoreFeature

Methods inherited from class org.fhcrc.cpl.viewer.feature.FeatureExtractor

analyze, analyzeScanAtATime, analyzeWindow, CombineScans, getAccurateMassAdjustmentScans, getDefault, getDefaultClass, getDumpWindowSize, getMzExtractionRange, getMzExtractionRange, getScans, setAccurateMassAdjustmentScans, setDefault, setDumpWindowSize, setStatusListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FeatureStrategyPeaks2

public FeatureStrategyPeaks2(MSRun run,
                             int scanIndex,
                             int count,
                             int maxCharge,
                             FloatRange range,
                             double sn)