org.fhcrc.cpl.viewer.feature
Class FeatureStrategyCombined

java.lang.Object
  org.fhcrc.cpl.viewer.feature.FeatureExtractor
      org.fhcrc.cpl.viewer.feature.FeatureStrategyUsingWindow
          org.fhcrc.cpl.viewer.feature.FeatureStrategyCombined

public class FeatureStrategyCombined
extends FeatureStrategyUsingWindow

User: mbellew Date: Nov 2, 2004

Nested Class Summary

Nested classes/interfaces inherited from class org.fhcrc.cpl.viewer.feature.FeatureExtractor

FeatureExtractor.StatusListener

Field Summary

Fields inherited from class org.fhcrc.cpl.viewer.feature.FeatureStrategyUsingWindow

_noise

Fields inherited from class org.fhcrc.cpl.viewer.feature.FeatureExtractor

_dumpWindowSize, _maxCharge, _mzRange, _run, _scanCount, _sn, _startScan, _status, DEFAULT_EXTRACTOR_PROPERTYNAME, TYPE_1D, TYPE_2D

Constructor Summary

FeatureStrategyCombined(MSRun run, int scanIndex, int count, int maxCharge, FloatRange range, double sn)

Method Summary

Feature[]	_analyze()
protected java.util.Collection	analyze2D(Scan[] scans) THIS IS THE MAIN FEATURE FINDING ROUTINE
int	getType()

Methods inherited from class org.fhcrc.cpl.viewer.feature.FeatureStrategyUsingWindow

_logDebug, _pickPeaks, _smooth, analyze1D, ExtractPeptideFeatures, ScoreFeature

Methods inherited from class org.fhcrc.cpl.viewer.feature.FeatureExtractor

analyze, analyzeScanAtATime, analyzeWindow, CombineScans, getAccurateMassAdjustmentScans, getDefault, getDefaultClass, getDumpWindowSize, getMzExtractionRange, getMzExtractionRange, getScans, setAccurateMassAdjustmentScans, setDefault, setDumpWindowSize, setStatusListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FeatureStrategyCombined

public FeatureStrategyCombined(MSRun run,
                               int scanIndex,
                               int count,
                               int maxCharge,
                               FloatRange range,
                               double sn)

Method Detail

getType

public int getType()

Overrides:

getType in class FeatureExtractor

_analyze

public Feature[] _analyze()
                   throws java.lang.InterruptedException

Overrides:

_analyze in class FeatureStrategyUsingWindow

Throws:

java.lang.InterruptedException

analyze2D

protected java.util.Collection analyze2D(Scan[] scans)

THIS IS THE MAIN FEATURE FINDING ROUTINE

Overrides:

analyze2D in class FeatureExtractor