org.fhcrc.cpl.viewer.feature
Class FeatureStrategyCentroided

java.lang.Object
  org.fhcrc.cpl.viewer.feature.FeatureExtractor
      org.fhcrc.cpl.viewer.feature.FeatureStrategyUsingWindow
          org.fhcrc.cpl.viewer.feature.FeatureStrategyCentroided

public class FeatureStrategyCentroided
extends FeatureStrategyUsingWindow

User: mbellew Date: Oct 6, 2004 Time: 9:30:21 PM

Nested Class Summary

Nested classes/interfaces inherited from class org.fhcrc.cpl.viewer.feature.FeatureExtractor

FeatureExtractor.StatusListener

Field Summary

Fields inherited from class org.fhcrc.cpl.viewer.feature.FeatureStrategyUsingWindow

_noise

Fields inherited from class org.fhcrc.cpl.viewer.feature.FeatureExtractor

_dumpWindowSize, _maxCharge, _mzRange, _run, _scanCount, _sn, _startScan, _status, DEFAULT_EXTRACTOR_PROPERTYNAME, TYPE_1D, TYPE_2D

Constructor Summary

FeatureStrategyCentroided(MSRun run, int scan, int count, int maxCharge, FloatRange range, double sn)

Method Summary

protected Spectrum.Peak[]	_pickPeaks(Scan scan)
static float[][]	backgroundSpectrum(float[][] centroided) for display/debugging
static float[][]	cleanSpectrum(float[][] centroided) for display/debugging

Methods inherited from class org.fhcrc.cpl.viewer.feature.FeatureStrategyUsingWindow

_analyze, _logDebug, _smooth, analyze1D, ExtractPeptideFeatures, ScoreFeature

Methods inherited from class org.fhcrc.cpl.viewer.feature.FeatureExtractor

analyze, analyze2D, analyzeScanAtATime, analyzeWindow, CombineScans, getAccurateMassAdjustmentScans, getDefault, getDefaultClass, getDumpWindowSize, getMzExtractionRange, getMzExtractionRange, getScans, getType, setAccurateMassAdjustmentScans, setDefault, setDumpWindowSize, setStatusListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FeatureStrategyCentroided

public FeatureStrategyCentroided(MSRun run,
                                 int scan,
                                 int count,
                                 int maxCharge,
                                 FloatRange range,
                                 double sn)

Method Detail

_pickPeaks

protected Spectrum.Peak[] _pickPeaks(Scan scan)

Overrides:

_pickPeaks in class FeatureStrategyUsingWindow

cleanSpectrum

public static float[][] cleanSpectrum(float[][] centroided)

for display/debugging

backgroundSpectrum

public static float[][] backgroundSpectrum(float[][] centroided)

for display/debugging