Package org.fhcrc.cpl.viewer.amt.commandline

Class Summary

AmtDatabaseCreatorCommandLineModule	Command line module for creating AMT databases, either from pepXml (or other feature) files, or from other AMT databases, or from random peptides pulled out of a FASTA file
AmtDatabaseDiagnosticCommandLineModule	Command line module for getting information and charts on an AMT database.
AmtDatabaseFeatureSetCreatorCLM	Command linemodule for creating featuresets that represent AMT databases
AmtDatabaseManagerCommandLineModule	Command linemodule for refining AMT databases
AmtDatabaseMatcherCLM	Command linemodule for matching AMT databases to MS1 data from various sources
AmtLabeledQuantCLM	Command linemodule for
CombineAmtMs2FilesCLM	Command linemodule for feature finding
ProteinRollupCommandLineModule	Command linemodule to help roll up peptide information to the protein level.