org.fhcrc.cpl.viewer.amt
Interface AmtFeatureSetMatcher

All Known Implementing Classes:

BaseAmtFeatureSetMatcherImpl, ClusteringFeatureSetMatcher, RecursiveFeatureSetMatcher

public interface AmtFeatureSetMatcher

Interface that must be implemented by any FeatureSetMatcher class. Defines some useful constants

Nested Class Summary

static class

AmtFeatureSetMatcher.FeatureMatchingResult This class represents the result of running FeatureSetMatcher.matchFeatures().

Field Summary

static double	DEFAULT_DELTA_HYDROPHOBICITY
static float	DEFAULT_DELTA_MASS_ABSOLUTE
static float	DEFAULT_DELTA_MASS_PPM
static int	DEFAULT_DELTA_MASS_TYPE
static int	DEFAULT_DELTA_SCAN
static double	DEFAULT_DELTA_TIME
static int	DELTA_MASS_TYPE_ABSOLUTE
static int	DELTA_MASS_TYPE_PPM

Method Summary

void	init(float deltaMass, int deltaMassType, float deltaHydrophobicity) init method must define the parameters common to all FeatureSetMatchers
AmtFeatureSetMatcher.FeatureMatchingResult	matchFeatures(FeatureSet masterSet, FeatureSet slaveSet) do the actual featureset matching.

Field Detail

DEFAULT_DELTA_MASS_ABSOLUTE

static final float DEFAULT_DELTA_MASS_ABSOLUTE

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Constant Field Values

DEFAULT_DELTA_MASS_PPM

static final float DEFAULT_DELTA_MASS_PPM

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Constant Field Values

DELTA_MASS_TYPE_ABSOLUTE

static final int DELTA_MASS_TYPE_ABSOLUTE

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Constant Field Values

DELTA_MASS_TYPE_PPM

static final int DELTA_MASS_TYPE_PPM

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Constant Field Values

DEFAULT_DELTA_MASS_TYPE

static final int DEFAULT_DELTA_MASS_TYPE

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Constant Field Values

DEFAULT_DELTA_SCAN

static final int DEFAULT_DELTA_SCAN

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Constant Field Values

DEFAULT_DELTA_TIME

static final double DEFAULT_DELTA_TIME

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Constant Field Values

DEFAULT_DELTA_HYDROPHOBICITY

static final double DEFAULT_DELTA_HYDROPHOBICITY

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Constant Field Values

Method Detail

init

void init(float deltaMass,
          int deltaMassType,
          float deltaHydrophobicity)

init method must define the parameters common to all FeatureSetMatchers

Parameters:

deltaMass -

deltaMassType -

deltaHydrophobicity -

matchFeatures

AmtFeatureSetMatcher.FeatureMatchingResult matchFeatures(FeatureSet masterSet,
                                                         FeatureSet slaveSet)

do the actual featureset matching.

Returns: