Package org.fhcrc.cpl.toolbox.proteomics.filehandler

Class Summary
BasePepXmlWriter An abstract base class for use as a wrapper for writing PepXml files.
FastaLoader User: migra Date: Jun 16, 2004 Time: 2:40:58 PM
FastaValidator User: adam Date: Jan 12, 2008 Time: 7:43:36 PM
MS2Loader  
MzXmlWriter A restrictive wrapper for writing mzXml files based on a single run.
PeptideProphetHandler User: arauch Date: Feb 16, 2006 Time: 1:53:08 PM
PeptideProphetHandler.PeptideProphetResult  
PeptideProphetSummary User: arauch Date: Mar 6, 2006 Time: 1:04:29 PM
PepXmlAnalysisResultHandler User: arauch Date: Feb 16, 2006 Time: 1:05:38 PM
PepXmlAnalysisResultHandler.PepXmlAnalysisResult  
PepXmlLoader  
PepXmlLoader.PeptideIterator  
PepXmlLoader.PepXmlFraction  
PepXmlLoader.PepXmlPeptide  
ProteinGroup User: jeckels Date: Feb 22, 2006
ProtXmlReader  
ProtXmlReader.Peptide  
ProtXmlReader.Protein  
ProtXmlReader.QuantitationRatio  
Q3AnalysisSummary Represent a q3 analysis summary loaded from pepXML
Q3Handler User: jeckels Date: Dec 14, 2006
Q3Handler.Q3Result  
RelativeQuantAnalysisResult Models an analysis result for very minimal relative quantitation of peptides.
RelativeQuantAnalysisSummary  
SensitivitySummary User: jeckels Date: Mar 13, 2006
XPressAnalysisSummary Represent an XPRESS analysis summary from a pepXML file
XPressHandler User: arauch Date: Feb 16, 2006 Time: 1:53:08 PM
XPressHandler.XPressResult  
 



Fred Hutchinson Cancer Research Center