org.fhcrc.cpl.toolbox.proteomics.filehandler
Class ProtXmlReader.Protein

java.lang.Object
  org.fhcrc.cpl.toolbox.proteomics.filehandler.ProtXmlReader.Protein

All Implemented Interfaces:

java.lang.Cloneable

Enclosing class:

ProtXmlReader

public static class ProtXmlReader.Protein
extends java.lang.Object
implements java.lang.Cloneable

Constructor Summary

ProtXmlReader.Protein()

ProtXmlReader.Protein(SimpleXMLStreamReader parser)

Method Summary

ProtXmlReader.Protein	clone()
java.util.List<java.lang.String>	getIndistinguishableProteinNames()
java.lang.Float	getPctSpectrumIds()
java.util.List<ProtXmlReader.Peptide>	getPeptides()
java.lang.Float	getPercentCoverage()
float	getProbability()
java.lang.String	getProteinName()
ProtXmlReader.QuantitationRatio	getQuantitationRatio()
int	getTotalNumberPeptides()
int	getUniquePeptidesCount()
void	setPctSpectrumIds(java.lang.Float pctSpectrumIds)
void	setPercentCoverage(java.lang.Float percentCoverage)
void	setProbability(float probability)
void	setProteinName(java.lang.String proteinName)
void	setTotalNumberPeptides(int totalNumberPeptides)
void	setUniquePeptidesCount(int uniquePeptidesCount)
java.lang.String	toString()

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

ProtXmlReader.Protein

public ProtXmlReader.Protein()

ProtXmlReader.Protein

public ProtXmlReader.Protein(SimpleXMLStreamReader parser)
                      throws javax.xml.stream.XMLStreamException

Throws:

javax.xml.stream.XMLStreamException

Method Detail

clone

public ProtXmlReader.Protein clone()

Overrides:

clone in class java.lang.Object

getProteinName

public java.lang.String getProteinName()

setProteinName

public void setProteinName(java.lang.String proteinName)

getPctSpectrumIds

public java.lang.Float getPctSpectrumIds()

setPctSpectrumIds

public void setPctSpectrumIds(java.lang.Float pctSpectrumIds)

getPercentCoverage

public java.lang.Float getPercentCoverage()

setPercentCoverage

public void setPercentCoverage(java.lang.Float percentCoverage)

getProbability

public float getProbability()

setProbability

public void setProbability(float probability)

getTotalNumberPeptides

public int getTotalNumberPeptides()

setTotalNumberPeptides

public void setTotalNumberPeptides(int totalNumberPeptides)

getPeptides

public java.util.List<ProtXmlReader.Peptide> getPeptides()

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

getIndistinguishableProteinNames

public java.util.List<java.lang.String> getIndistinguishableProteinNames()

getUniquePeptidesCount

public int getUniquePeptidesCount()

setUniquePeptidesCount

public void setUniquePeptidesCount(int uniquePeptidesCount)

getQuantitationRatio

public ProtXmlReader.QuantitationRatio getQuantitationRatio()