org.fhcrc.cpl.toolbox.proteomics.filehandler
Class PeptideProphetSummary

java.lang.Object
  org.fhcrc.cpl.toolbox.proteomics.filehandler.SensitivitySummary
      org.fhcrc.cpl.toolbox.proteomics.filehandler.PeptideProphetSummary

public class PeptideProphetSummary
extends SensitivitySummary

User: arauch Date: Mar 6, 2006 Time: 1:04:29 PM

Nested Class Summary

Nested classes/interfaces inherited from class org.fhcrc.cpl.toolbox.proteomics.filehandler.SensitivitySummary

SensitivitySummary.ProbabilityInfo

Field Summary

Fields inherited from class org.fhcrc.cpl.toolbox.proteomics.filehandler.SensitivitySummary

_error, _minProb, _sensitivity

Constructor Summary

PeptideProphetSummary()

Method Summary

double	distributionR2(int charge)
float[]	getFval()
byte[]	getFValSeries()
float[]	getModelNeg(int charge)
byte[]	getModelNegSeries1()
byte[]	getModelNegSeries2()
byte[]	getModelNegSeries3()
float[]	getModelPos(int charge)
byte[]	getModelPosSeries1()
byte[]	getModelPosSeries2()
byte[]	getModelPosSeries3()
float[]	getModelTotal(int charge)
float[]	getObs(int charge)
byte[]	getObsSeries1()
byte[]	getObsSeries2()
byte[]	getObsSeries3()
static PeptideProphetSummary	load(SimpleXMLStreamReader parser)
void	setFValSeries(byte[] pepProphetFValSeries)
void	setModelNegSeries1(byte[] pepProphetModelNegSeries1)
void	setModelNegSeries2(byte[] pepProphetModelNegSeries2)
void	setModelNegSeries3(byte[] pepProphetModelNegSeries3)
void	setModelPosSeries1(byte[] pepProphetModelPosSeries1)
void	setModelPosSeries2(byte[] pepProphetModelPosSeries2)
void	setModelPosSeries3(byte[] pepProphetModelPosSeries3)
void	setObsSeries1(byte[] pepProphetObsSeries1)
void	setObsSeries2(byte[] pepProphetObsSeries2)
void	setObsSeries3(byte[] pepProphetObsSeries3)
static byte[]	toByteArray(float[] x)
static byte[]	toByteArray(int[] x)
static float[]	toFloatArray(byte[] source)
static int[]	toIntArray(byte[] source)

Methods inherited from class org.fhcrc.cpl.toolbox.proteomics.filehandler.SensitivitySummary

calculateErrorRate, getError, getErrorSeries, getMinProb, getMinProbSeries, getRun, getSensitivity, getSensitivitySeries, setErrorSeries, setMinProbSeries, setRun, setSensitivitySeries

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PeptideProphetSummary

public PeptideProphetSummary()

Method Detail

load

public static PeptideProphetSummary load(SimpleXMLStreamReader parser)
                                  throws javax.xml.stream.XMLStreamException

Throws:

javax.xml.stream.XMLStreamException

getFValSeries

public byte[] getFValSeries()

setFValSeries

public void setFValSeries(byte[] pepProphetFValSeries)

getObsSeries1

public byte[] getObsSeries1()

setObsSeries1

public void setObsSeries1(byte[] pepProphetObsSeries1)

getObsSeries2

public byte[] getObsSeries2()

setObsSeries2

public void setObsSeries2(byte[] pepProphetObsSeries2)

getObsSeries3

public byte[] getObsSeries3()

setObsSeries3

public void setObsSeries3(byte[] pepProphetObsSeries3)

getModelPosSeries1

public byte[] getModelPosSeries1()

setModelPosSeries1

public void setModelPosSeries1(byte[] pepProphetModelPosSeries1)

getModelPosSeries2

public byte[] getModelPosSeries2()

setModelPosSeries2

public void setModelPosSeries2(byte[] pepProphetModelPosSeries2)

getModelPosSeries3

public byte[] getModelPosSeries3()

setModelPosSeries3

public void setModelPosSeries3(byte[] pepProphetModelPosSeries3)

getModelNegSeries1

public byte[] getModelNegSeries1()

setModelNegSeries1

public void setModelNegSeries1(byte[] pepProphetModelNegSeries1)

getModelNegSeries2

public byte[] getModelNegSeries2()

setModelNegSeries2

public void setModelNegSeries2(byte[] pepProphetModelNegSeries2)

getModelNegSeries3

public byte[] getModelNegSeries3()

setModelNegSeries3

public void setModelNegSeries3(byte[] pepProphetModelNegSeries3)

getFval

public float[] getFval()

getObs

public float[] getObs(int charge)

getModelPos

public float[] getModelPos(int charge)

getModelNeg

public float[] getModelNeg(int charge)

getModelTotal

public float[] getModelTotal(int charge)

distributionR2

public double distributionR2(int charge)

toFloatArray

public static float[] toFloatArray(byte[] source)

toByteArray

public static byte[] toByteArray(float[] x)

toByteArray

public static byte[] toByteArray(int[] x)

toIntArray

public static int[] toIntArray(byte[] source)