Package org.fhcrc.cpl.toolbox.proteomics.feature

Class Summary

AnalyzeICAT	Created by IntelliJ IDEA.
AnalyzeICAT.IsotopicLabel
Deconvoluter	This class handles deconvolution of features; that is, identifying features that we've found in multiple charge states and collapsing them down.
Feature	Copyright (C) 2004 Fred Hutchinson Cancer Research Center.
Feature.IntensityDescComparator
Feature.MassAscComparator
Feature.MzAscComparator
Feature.MzDistAscComparator
Feature.MzScanAscComparator
Feature.PeaksKLComparatorDesc	Compare features based on "quality".
Feature.ScanAscComparator
Feature.ScanChargeMzAscComparator	This one is useful for associating equivalent features in multiple files with each other, through equivalent ordering
FeatureAsMap	This is a subclass of Feature that implements Map.
FeatureClusterer	2-dimensional clusterer for clustering Features
FeatureClusterer.FeatureClusterable	Pragmatic abstract class to help you cluster sets of features.
FeatureClusterer.FeatureMassScanClusterable	Clusterable for clustering based on feature mass and scan.
FeatureClusterer.FeatureMassTimeClusterable	Clusterable for clustering based on feature mass and time.
FeatureClusterer.FeatureMzScanClusterable	Clusterable for clustering based on feature mz and scan.
FeatureClusterer.FeatureMzTimeClusterable	Clusterable for clustering based on feature mz and time.
FeatureGrouper	Uses clustering (Clusterer2D) to align multiple feature sets
FeatureMassCalibrationUtilities	Utilities for recalibrating and characterizing the mass calibration of sets of features, based on an approach that uses theoretical peptide mass clusters.
FeaturePepXmlWriter	A restrictive wrapper for writing PepXml files, using a Feature array to populate the spectrum_queries
FeatureSet	User: migra Date: Sep 13, 2004 Time: 3:05:56 PM
FeatureSet.FeatureSelector
Spectrum	User: mbellew Date: Jun 2, 2004 Time: 1:57:21 PM
Spectrum.CentroidedPeak
Spectrum.Peak