org.fhcrc.cpl.toolbox.proteomics.feature.filehandler
Class NativeTSVFeatureFileHandler

java.lang.Object
  org.fhcrc.cpl.toolbox.proteomics.feature.filehandler.BaseFeatureSetFileHandler
      org.fhcrc.cpl.toolbox.proteomics.feature.filehandler.NativeTSVFeatureFileHandler

All Implemented Interfaces:

FeatureSetFileHandler

public class NativeTSVFeatureFileHandler
extends BaseFeatureSetFileHandler
implements FeatureSetFileHandler

File handler for native msInspect feature files

Field Summary

static java.lang.String	FILE_TYPE_NAME
protected static NativeTSVFeatureFileHandler	singletonInstance

Fields inherited from class org.fhcrc.cpl.toolbox.proteomics.feature.filehandler.BaseFeatureSetFileHandler

dumpWindow

Constructor Summary

NativeTSVFeatureFileHandler()

Method Summary

boolean	canHandleFile(java.io.File file) Can this type of file handler handle this specific file? Implementation is up to the handler, but this should be as low-cost as possible
static NativeTSVFeatureFileHandler	getSingletonInstance()
FeatureSet	loadFeatureSet(java.io.File file) Load a FeatureSet
void	saveFeatureSet(FeatureSet featureSet, java.io.File outFile) Save a FeatureSet
void	saveFeatureSet(FeatureSet featureSet, java.io.PrintWriter out) Save a FeatureSet

Methods inherited from class org.fhcrc.cpl.toolbox.proteomics.feature.filehandler.BaseFeatureSetFileHandler

getFileTypeName, isXMLFile, setDumpWindow

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.fhcrc.cpl.toolbox.proteomics.feature.filehandler.FeatureSetFileHandler

getFileTypeName, setDumpWindow

Field Detail

FILE_TYPE_NAME

public static final java.lang.String FILE_TYPE_NAME

See Also:

Constant Field Values

singletonInstance

protected static NativeTSVFeatureFileHandler singletonInstance

Constructor Detail

NativeTSVFeatureFileHandler

public NativeTSVFeatureFileHandler()

Method Detail

getSingletonInstance

public static NativeTSVFeatureFileHandler getSingletonInstance()

loadFeatureSet

public FeatureSet loadFeatureSet(java.io.File file)
                          throws java.io.IOException

Load a FeatureSet

Specified by:

loadFeatureSet in interface FeatureSetFileHandler

Parameters:

file -

Returns:

Throws:

java.io.IOException

saveFeatureSet

public void saveFeatureSet(FeatureSet featureSet,
                           java.io.File outFile)
                    throws java.io.IOException

Description copied from interface: FeatureSetFileHandler

Save a FeatureSet

Specified by:

saveFeatureSet in interface FeatureSetFileHandler

Throws:

java.io.IOException

saveFeatureSet

public void saveFeatureSet(FeatureSet featureSet,
                           java.io.PrintWriter out)

Save a FeatureSet

Specified by:

saveFeatureSet in interface FeatureSetFileHandler

Parameters:

featureSet -

out -

canHandleFile

public boolean canHandleFile(java.io.File file)
                      throws java.io.IOException

Can this type of file handler handle this specific file? Implementation is up to the handler, but this should be as low-cost as possible

Specified by:

canHandleFile in interface FeatureSetFileHandler

Parameters:

file -

Returns:

Throws:

java.io.IOException