org.fhcrc.cpl.toolbox.proteomics.feature
Class AnalyzeICAT.IsotopicLabel

java.lang.Object
  org.fhcrc.cpl.toolbox.proteomics.feature.AnalyzeICAT.IsotopicLabel

Enclosing class:

AnalyzeICAT

public static class AnalyzeICAT.IsotopicLabel
extends java.lang.Object

Field Summary

protected float	heavy
protected float	light
protected int	maxLabelCount
protected java.lang.String	name
protected char	residue

Constructor Summary

AnalyzeICAT.IsotopicLabel(float light, float heavy, char residue, int maxLabelCount)

AnalyzeICAT.IsotopicLabel(java.lang.String s)
Parse an isotopic label string.

AnalyzeICAT.IsotopicLabel(java.lang.String name, float light, float heavy, char residue, int maxLabelCount)

Method Summary

float	getHeavy()
float	getLight()
int	getMaxLabelCount()
java.lang.String	getName()
char	getResidue()
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

name

protected java.lang.String name

light

protected float light

heavy

protected float heavy

residue

protected char residue

maxLabelCount

protected int maxLabelCount

Constructor Detail

AnalyzeICAT.IsotopicLabel

public AnalyzeICAT.IsotopicLabel(java.lang.String name,
                                 float light,
                                 float heavy,
                                 char residue,
                                 int maxLabelCount)

AnalyzeICAT.IsotopicLabel

public AnalyzeICAT.IsotopicLabel(float light,
                                 float heavy,
                                 char residue,
                                 int maxLabelCount)

AnalyzeICAT.IsotopicLabel

public AnalyzeICAT.IsotopicLabel(java.lang.String s)

Parse an isotopic label string. An example string representation is "100.0+4.05#3@C" to be parsed as floating point light tag weight, plus symbol, delta weight for the heavy label, number symbol, maximum number of labels to consider, at sign, residue to be labeled. If the maximum number of labels to consider is left off, it defaults to 3. If supplied, this must be positive. If the residue to be labeled is left off, it defaults to a blank to indicate that the labeling scheme a part of the peptide other than a specific residue (e.g. the C or N terminus).

Method Detail

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

getName

public java.lang.String getName()

getLight

public float getLight()

getHeavy

public float getHeavy()

getResidue

public char getResidue()

getMaxLabelCount

public int getMaxLabelCount()