org.fhcrc.cpl.toolbox.gui.chart
Class PanelWithHeatMap

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  org.fhcrc.cpl.toolbox.gui.chart.PanelWithChart
                      org.fhcrc.cpl.toolbox.gui.chart.PanelWithHeatMap

All Implemented Interfaces:

java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, javax.accessibility.Accessible

Direct Known Subclasses:

PanelWithFractionatedExpHeatMap, PanelWithSpectrumChart

public class PanelWithHeatMap
extends PanelWithChart

PanelWithChart implementation to make it easy to put out Line Charts If you want to do anything super-serious with the chart, use getChart() and getRenderer()

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

protected org.jfree.data.xy.XYDataset	dataset
protected java.lang.String	dataSetName
static int	DEFAULT_PALETTE
static int	DISTINCT_PALETTE_VALUES
protected double	lowerZBound
protected int	palette
static int	PALETTE_BLUE
static int	PALETTE_BLUE_RED
static int	PALETTE_GRAYSCALE
static int	PALETTE_POSITIVE_WHITE_BLUE_NEGATIVE_BLACK_RED
static int	PALETTE_RED
static int	PALETTE_WHITE_BLUE
protected org.jfree.chart.renderer.xy.XYBlockRenderer	renderer
protected double	upperZBound
protected org.jfree.chart.axis.NumberAxis	xAxis
protected double[]	xValues
protected org.jfree.chart.axis.NumberAxis	yAxis
protected double[]	yValues
protected double[][]	zValues

Fields inherited from class org.fhcrc.cpl.toolbox.gui.chart.PanelWithChart

_chart, _chartPanel, _plot, DEFAULT_HEIGHT_FOR_IMAGE_FILE, DEFAULT_WIDTH_FOR_IMAGE_FILE

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

PanelWithHeatMap()

PanelWithHeatMap(double[][] zValues, java.lang.String dataSetName)

PanelWithHeatMap(double[] xValues, double[] yValues, double[][] zValues, java.lang.String dataSetName)

PanelWithHeatMap(float[][] zValues, java.lang.String dataSetName)

PanelWithHeatMap(float[] xValues, float[] yValues, float[][] zValues, java.lang.String dataSetName)

PanelWithHeatMap(java.lang.String dataSetName)

Method Summary

protected static void	addValuesToPaintScale(org.jfree.chart.renderer.LookupPaintScale paintScale, double lowerBound, double upperBound, java.awt.Color lowColor, java.awt.Color highColor)
static org.jfree.chart.renderer.LookupPaintScale	createPaintScale(double lowerBound, double upperBound, java.awt.Color lowColor, java.awt.Color highColor) Creates a paintscale that has _distinctValues_ even increments between lowColor and highColor, starting with value lowerBound and ending with upperBound
org.jfree.chart.renderer.LookupPaintScale	createPaintScale(int palette)
org.jfree.chart.renderer.xy.XYItemRenderer	getRenderer()
org.jfree.chart.axis.NumberAxis	getXAxis()
double[]	getXValues()
org.jfree.chart.axis.NumberAxis	getYAxis()
double[]	getYValues()
double[][]	getZValues()
protected void	init()
void	setAxisLabels(java.lang.String xLabel, java.lang.String yLabel)
void	setBlockWidthHeight(float blockWidth, float blockHeight)
void	setData(double[][] zValues) Map out a grid of x and y values for the z values
void	setData(double[] xValues, double[] yValues, double[][] zValues)
void	setData(float[] xValues, float[] yValues, float[][] zValues)
void	setPaintScale(org.jfree.chart.renderer.LookupPaintScale newPaintScale)
void	setPalette(int palette)
void	setXValues(double[] xValues)
void	setYValues(double[] yValues)
void	setZValues(double[][] zValues)

Methods inherited from class org.fhcrc.cpl.toolbox.gui.chart.PanelWithChart

addItemToPopupMenu, addSeparatorToPopupMenu, createImage, createImage, displayDialog, displayInTab, displayInTab, getChart, getChartPanel, getPlot, getToolTipText, init, init, initPopupMenu, isShowLegend, saveChartDataToCSV, saveChartDataToFile, saveChartDataToTSV, saveChartToImageFile, saveChartToImageFile, setPreferredSize, setShowLegend

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

dataset

protected org.jfree.data.xy.XYDataset dataset

xAxis

protected org.jfree.chart.axis.NumberAxis xAxis

yAxis

protected org.jfree.chart.axis.NumberAxis yAxis

dataSetName

protected java.lang.String dataSetName

renderer

protected org.jfree.chart.renderer.xy.XYBlockRenderer renderer

xValues

protected double[] xValues

yValues

protected double[] yValues

zValues

protected double[][] zValues

lowerZBound

protected double lowerZBound

upperZBound

protected double upperZBound

PALETTE_BLUE_RED

public static final int PALETTE_BLUE_RED

See Also:

Constant Field Values

PALETTE_RED

public static final int PALETTE_RED

See Also:

Constant Field Values

PALETTE_BLUE

public static final int PALETTE_BLUE

See Also:

Constant Field Values

PALETTE_GRAYSCALE

public static final int PALETTE_GRAYSCALE

See Also:

Constant Field Values

PALETTE_WHITE_BLUE

public static final int PALETTE_WHITE_BLUE

See Also:

Constant Field Values

PALETTE_POSITIVE_WHITE_BLUE_NEGATIVE_BLACK_RED

public static final int PALETTE_POSITIVE_WHITE_BLUE_NEGATIVE_BLACK_RED

See Also:

Constant Field Values

DEFAULT_PALETTE

public static final int DEFAULT_PALETTE

See Also:

Constant Field Values

palette

protected int palette

DISTINCT_PALETTE_VALUES

public static final int DISTINCT_PALETTE_VALUES

See Also:

Constant Field Values

Constructor Detail

PanelWithHeatMap

public PanelWithHeatMap()

PanelWithHeatMap

public PanelWithHeatMap(java.lang.String dataSetName)

PanelWithHeatMap

public PanelWithHeatMap(float[] xValues,
                        float[] yValues,
                        float[][] zValues,
                        java.lang.String dataSetName)

PanelWithHeatMap

public PanelWithHeatMap(double[] xValues,
                        double[] yValues,
                        double[][] zValues,
                        java.lang.String dataSetName)

PanelWithHeatMap

public PanelWithHeatMap(float[][] zValues,
                        java.lang.String dataSetName)

PanelWithHeatMap

public PanelWithHeatMap(double[][] zValues,
                        java.lang.String dataSetName)

Method Detail

init

protected void init()

setAxisLabels

public void setAxisLabels(java.lang.String xLabel,
                          java.lang.String yLabel)

setData

public void setData(float[] xValues,
                    float[] yValues,
                    float[][] zValues)

setData

public void setData(double[][] zValues)

Map out a grid of x and y values for the z values

Parameters:

zValues -

setData

public void setData(double[] xValues,
                    double[] yValues,
                    double[][] zValues)

createPaintScale

public org.jfree.chart.renderer.LookupPaintScale createPaintScale(int palette)

addValuesToPaintScale

protected static void addValuesToPaintScale(org.jfree.chart.renderer.LookupPaintScale paintScale,
                                            double lowerBound,
                                            double upperBound,
                                            java.awt.Color lowColor,
                                            java.awt.Color highColor)

createPaintScale

public static org.jfree.chart.renderer.LookupPaintScale createPaintScale(double lowerBound,
                                                                         double upperBound,
                                                                         java.awt.Color lowColor,
                                                                         java.awt.Color highColor)

Creates a paintscale that has _distinctValues_ even increments between lowColor and highColor, starting with value lowerBound and ending with upperBound

Parameters:

lowerBound -

upperBound -

lowColor -

highColor -

Returns:

setBlockWidthHeight

public void setBlockWidthHeight(float blockWidth,
                                float blockHeight)

setPaintScale

public void setPaintScale(org.jfree.chart.renderer.LookupPaintScale newPaintScale)

setPalette

public void setPalette(int palette)

getRenderer

public org.jfree.chart.renderer.xy.XYItemRenderer getRenderer()

getXAxis

public org.jfree.chart.axis.NumberAxis getXAxis()

getYAxis

public org.jfree.chart.axis.NumberAxis getYAxis()

getXValues

public double[] getXValues()

setXValues

public void setXValues(double[] xValues)

getYValues

public double[] getYValues()

setYValues

public void setYValues(double[] yValues)

getZValues

public double[][] getZValues()

setZValues

public void setZValues(double[][] zValues)